3D Genome
DeepChIA-PET
Accurately predicting ChIA-PET from Hi-C and ChIP-seq with deep dilated networks
build Access SoftwareDNA Methylation Prediction
scHiMe
Predicting single-cell DNA methylation levels based on single-cell Hi-C data
build Access Software4D Genome
ST-CHIP
Accurate prediction of spatiotemporal ChIP-seq data with recurrent neural networks
build Access SoftwareProtein Structure Prediction
LAW
Predicting residue-specific qualities of individual protein models using graph neural networks
build Access SoftwareProtein Structure Prediction
MASS2
Predicting residue-specific qualities of individual protein models using residual neural networks
build Access Software3D genome
scHiCEmbed
scHiCEmbed: bin-specific embeddings of single-cell Hi-C data using graph auto-encoders
build Access SoftwareProtein function prediction
PANDA2
PANDA2: protein function prediction using graph neural networks
build Access Software3D genome
LJ3D
Inferring single-Cell 3D chromosomal structures based on the Lennard-Jones potential
build Access Software3D genome
normGAM
normGAM: an R package to remove systematic biases in genome architecture mapping data
build Access Software3D genome
HiCNN2
HiCNN2: Enhancing the resolution of Hi-C data using an ensemble of convolutional neural networks
build Access Software3D genome
3D-XCI
Inferring the three-dimensional structures of the X-chromosome during X-inactivation
build Access Software3D genome
HiCNN
A very deep convolutional neural network to better enhance the resolution of Hi-C data
build Access Software3D genome
TADKB
Family classification and a knowledge base of topologically associating domains
build Access Software3D genome
SCL
A lattice-based approach to infer three-dimensional chromosome structures from single-cell Hi-C data
build Access Software3D genome
HiCNet
Reconstruct high-resolution chromosome 3D structures based on Hi-C complex networks
build Access Software3D genome
3DChrom
Reconstruct chromosome 3D structures using multidimensional scaling.
build Access SoftwareProtein structure prediction
MASS
Predict the global qualities of individual protein models using random forests and novel statistical potentials
build Access SoftwareProtein structure prediction
RFcon
Predict protein residue-residue contacts using random forests and deep networks
build Access SoftwareProtein structure prediction
SOV_refine
A further refined definition of segment overlap score
build Access SoftwareProtein function prediction
GOGO
An improved algorithm to measure the semantic similarity between gene ontology terms
build Access SoftwareProtein function prediction
PANDA
Protein function prediction using domain architecture and affinity propagation
build Access SoftwareDNA Methylation Prediction
DeepMethyl
Predict DNA methylation state of CpG dinucleotide using genome topological features and deep networks
build Access Software3D Genome
DeepChIA-PET
Accurately predicting ChIA-PET from Hi-C and ChIP-seq with deep dilated networks
build Access Software3D genome
scHiCEmbed
scHiCEmbed: bin-specific embeddings of single-cell Hi-C data using graph auto-encoders
build Access Software3D genome
LJ3D
Inferring single-Cell 3D chromosomal structures based on the Lennard-Jones potential
build Access Software3D genome
normGAM
normGAM: an R package to remove systematic biases in genome architecture mapping data
build Access Software3D genome
HiCNN2
HiCNN2: Enhancing the resolution of Hi-C data using an ensemble of convolutional neural networks
build Access Software3D genome
3D-XCI
Inferring the three-dimensional structures of the X-chromosome during X-inactivation
build Access Software3D genome
HiCNN
A very deep convolutional neural net-work to better enhance the resolution of Hi-C data
build Access Software3D genome
TADKB
Family classification and a knowledge base of topologically associating domains
build Access Software3D genome
SCL
A lattice-based approach to infer three-dimensional chromosome structures from single-cell Hi-C data
build Access Software3D genome
HiCNet
Reconstruct high-resolution chromosome 3D structures based on Hi-C complex networks
build Access Software3D genome
3DChrom
Reconstruct chromosome 3D structures using multidimensional scaling.
build Access Software4D Genome
ST-CHIP
Accurate prediction of spatiotemporal ChIP-seq data with recurrent neural networks
build Access SoftwareProtein Structure Prediction
LAW
Predicting residue-specific qualities of individual protein models using graph neural networks
build Access SoftwareProtein Structure Prediction
MASS2
Predicting residue-specific qualities of individual protein models using residual neural networks
build Access SoftwareProtein structure prediction
MASS
Predict the global qualities of individual protein models using random forests and novel statistical potentials
build Access SoftwareProtein structure prediction
RFcon
Predict protein residue-residue contacts using random forests and deep networks
build Access SoftwareProtein structure prediction
SOV_refine
A further refined definition of segment overlap score
build Access SoftwareProtein function prediction
PANDA2
PANDA2: protein function prediction using graph neural networks
build Access SoftwareProtein function prediction
GOGO
An improved algorithm to measure the semantic similarity between gene ontology terms
build Access SoftwareProtein function prediction
PANDA
Protein function prediction using domain architecture and affinity propagation
build Access SoftwareDNA Methylation Prediction
scHiMe
Predicting single-cell DNA methylation levels based on single-cell Hi-C data
build Access SoftwareDNA Methylation Prediction
DeepMethyl
Predict DNA methylation state of CpG dinucleotide using genome topological features and deep networks
build Access Software
